S.No | Technique | Peptide Sequence | MHC class | PDB | RMSD (Ã…) | ||
---|---|---|---|---|---|---|---|
 |  |  |  |  | Published | Previousmethod | pDOCK |
1 | Grid-based Flexible docking [34] | RGYVYQGL | I | 1kpu# | 0.76 | 0.59 | 0.31 |
2 | Grid-based Flexible docking [34] | ALWGFVPVL | I | 1i7u | 0.23 | 0.32 | 0.29 |
3 | Grid-based Flexible docking [34] | ELAGIGILTV | I | 1jf1 | 0.22 | 1.53 | 0.30 |
4 | Monte Carlo annealing [37] | LLFGYPVYV | I | 1duz# | 3.01 | 0.33 | 0.33 |
5 | Simulated annealing [38] | FLPSDFFPSV | I | 1hhh | 1.59 | 1.10 | 0.48 |
6 | Simulated annealing [38] | GILGFVFTL | I | 1hhi# | 0.46 | 0.32 | 0.16 |
7 | Simulated annealing [38] | ILKEPVHGV | I | 1hhj# | 0.87 | 0.87 | 0.55 |
8 | Simulated annealing [38] | LLFGYPVYV | I | 1hhk# | 0.78 | 0.33 | 0.33 |
9 | Combinatorial buildup algorithm [39] | RGYVYQGL | I | 2vaa# | 0.56 | 0.32 | 0.22 |
10 | Combinatorial buildup algorithm [40] | LLFGYPVYV | I | 1hhk# | 1.40 | 0.33 | 0.33 |
11 | Combinatorial buildup algorithm [40] | ILKEPVHGV | I | 1hhj# | 1.30 | 0.87 | 0.55 |
12 | Combinatorial buildup algorithm [40] | GILGFVFTL | I | 1hhi# | 1.60 | 0.32 | 0.16 |
13 | Multiple copy algorithm [41] | FAPGNYPAL | I | 2vab# | 2.70 | 0.40 | 0.25 |
14 | Multiple copy algorithm [42] | GILGFVFTL | I | 1hhi# | 1.40 | 0.32 | 0.16 |
15 | GOLD/GLIDE Flexible docking [36] | XXRXMASX | II | 1d6e | 1.24/3.06 | 0.32 | 0.14 |