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Figure 2 | Immunome Research

Figure 2

From: AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data

Figure 2

Overview of the different search methods within AntiJen. The example search is focused upon an MHC ligand. The MHC ligand data can be searched directly (A) from a link on the AntiJen homepage, a broad search and specific search is available. A search for the epitope AMALLRLPLV, has one hit (D), this leads to the entry (G). All of the other sub-databases can be searched in this manner from the homepage. The two other searches are more generalised. A Keyword search (B) carries out a broad search on the whole database, for the criteria – Bacteria. This search gives 139 hits (E) and all of the sub-database entries can be selected from this output. The final search method is a BLAST search (C). The peptide (or nucleotide) sequence is queried against a local protein database. The output (F) provides links to the sub-databases relative to the protein.

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