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Table 1 Description of HLA-DR4 (B1*0401) benchmark datasets.

From: Prediction of MHC class II binding peptides based on an iterative learning model

Set

Original Dataset

Homology Reduced Dataset

 

Total

Binders

Non Binders

Total

Binders

Non Binders

Set 1

1017

694

323

531

248

283

Set 2

673

381

292

416

161

255

Set 3a

590

373

217

355

151

204

Set 3b

495

279

216

325

128

197

Set 4a

646

323

323

403

120

283

Set 4b

584

292

292

375

120

255

Set 5a

117

70

47

110

65

45

Set 5b

85

48

37

84

47

37

Southwood

105

22

83

99

19

80

Geluk

22

16

6

21

15

6