PREDTAP: a system for prediction of peptide binding to the human transporter associated with antigen processing

Immunome Research

Table 6 Amino acid position of the top 5% predicted TAP binders in HPV 16 E7 (P03129) by SVMTAP, TAPPred and PRED^TAP. The positions marked by "+" were selected by four prediction models and those marked by ""were selected by three prediction models. The experimentally identified HLA-A0201 binder is 89–97. ¹Within a 16-mer containing E7 89–97

SVMTAP	TAPPred (SVM)	TAPPred (Cascade SVM)	PRED^TAP (ANN)	PRED^TAP (HMM)
49⁺	49⁺	58	50*	49⁺
9*	50*	57	9*	44
50*	17	88¹	49⁺	43
59	9*	82¹	48	71
7	59	67	76	3