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Table 2 Predicted peptide candidates utilized for screening CD8+ T cells1

From: Human immunome, bioinformatic analyses using HLA supermotifs and the parasite genome, binding assays, studies of human T cell responses, and immunization of HLA-A*1101 transgenic mice including novel adjuvants provide a foundation for HLA-A03 restricted CD8+T cell epitope based, adjuvanted vaccine protective against Toxoplasma gondii

HLA-A*1101

ANTIGEN

PEPTIDE SEQUENCES

LENGTH

LOCATION

PREDICTED IC50 nM

POOL

HLA-A*1101

GRA15

STSPFATRK

9

152-160

5

P1

HLA-A*1101

GRA15

ASTSPFATRK

10

150-159

18.2

 

HLA-A*1101

GRA10

AAAATPGLPK

10

568-577

9

 

HLA-A*1101

GRA10

AAATPGLPK

9

569-577

13.2

 

HLA-A*1101

GRA10

GVPAVPGLLK

10

507-516

17

 

HLA-A*1101

GRA10

SVVEENTMAK

10

865-874

25.1

 

HLA-A*1101

SAG2C

STFWPCLLR

9

13-21

9.3

P2

HLA-A*1101

SAG2C

ALLDHVFIEK

10

231-240

11.9

 

HLA-A*1101

SAG2C

SSPQNIFYK

9

290-298

12.9

 

HLA-A*1101

SAG2C

STTGVGETGK

10

163-172

28.4

 

HLA-A*1101

SAG2C

GTEYSLALK

9

136-144

35.4

 

HLA-A*1101

SAG2D

SSPQNIFYK

9

122-130

12.9

 

HLA-A*1101

SAG2D

ALLEHVFIEK

10

63-72

20.2

P3

HLA-A*1101

SAG2D

SSAQTFFYK

9

290-298

1.8

 

HLA-A*1101

SAG2D

TVYFSCDPK

9

154-162

5.3

 

HLA-A*1101

SAG2D

PSSAQTFFYK

10

289-298

17.9

 

HLA-A*1101

SAG3

VVGHVTLNK

9

80-88

15.4

 

HLA-A*1101

SAG3

KQYWYKIEK

9

145-153

19.3

 

HLA-A*1101

SRS9

TTCSVLVTVK

10

357-366

20.6

P4

HLA-A*1101

SRS9

AAASVQVPLK

10

140-149

29.9

 

HLA-A*1101

SRS9

AIQSQKWTLK

10

169-178

35

 

HLA-A*1101

BSR4

TTRFVEIFPK

10

284-293

10.3

 

HLA-A*1101

BSR4

VSGSLTLSK

9

83-91

21.1

 

HLA-A*1101

SPA

SSAYVFSVK

9

250-258

9.3

P5

HLA-A*1101

SPA

TSSAYVFSVK

10

249-258

12.2

 

HLA-A*1101

SPA

YVFSVKELPK

10

253-262

18

 

HLA-A*1101

SPA

KTEATYCYK

9

262-270

18.4

 

HLA-A*1101

SPA

MTLMITRDSK

10

195-204

25.5

 

HLA-A*1101

SPA

AVVSLLRLLK

10

89-98

6.5

 

HLA-A*1101

SPA

VVSLLRLLK

9

90-98

7.2

 

HLA-A*1101

MIC1

LTLTFISTK

9

338-346

13.8

P6

HLA-A*1101

MIC3

SVQLGSFDK

9

32-40

12.9

 

HLA-A*1101

MIC4

SAVWFGVAK

9

16-24

17.2

 

HLA-A*1101

MICA2P

GVMTPNQMVK

10

63-72

14.3

 
  1. 1 Peptides derived from GRA10, GRA15, SAG2C, SAG2D, SAG2X, SAG3, SRS9, BSR4, SPA, MIC1, MICA2P were screened for potential supertype epitopes using the ARB algorithms from immunoepitope database at http://www.iedb.org/ on the basis of their predicted binding affinity to HLA-A*1101. A total of 34 unique peptides IC50 < 50 nM (lower score, higher predicted binding affinity) of all ranked nonameric or decameric peptides were selected.