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Table 2 Reciprocal comparison of TFBS prediction scores between random vs. test gene sets.

From: Motif prediction to distinguish LPS-stimulated pro-inflammatory vs. antibacterial macrophage genes

Matrix Accession Number

TF name

MEME

MEME

Motif Modeler

Motif Modeler

PASTAA

PASTAA

  

E-value*

E-value**

TCS score*

TCS score**

P-value*

P-value**

M00649

MAZ

-

4.10E+05

1.73E-02

8.28E-03

2.49E-02

6.92E-03

M00423

Foxj2

-

1.80E+07

1.45E-02

7.25E-03

6.00E-01

5.05E-01

  1. * Score from the test gene set
  2. ** Score from random gene set
  3. Blank cells represent TFBS that were not identified by the respective tool in the test or random set. For MotifModeler, higher the TCS score better the prediction whereas for PASTAA, lower the P-value better the prediction.
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Immunome Research

ISSN: 1745-7580