Skip to main content

Table 1 The performance of BPP based SVM model developed using different window lengths from 5 to 21 residues

From: Identification of conformational B-cell Epitopes in an antigen from its primary sequence

Window size

Kernel parameters

Thr*

Sen

Spe

Acc

MCC

5

t 2 g 0.01 j 1 c 10

0.1

58.38

58.55

58.47

0.17

7

t 2 g 0.01 j 1 c 1

0.1

55.87

59.81

57.84

0.16

9

t 2 g 0.01 j 1 c 1

0.1

55.66

58.85

57.26

0.15

11

t 2 g 0.001 j 1 c 10

0

61.55

56.99

59.27

0.19

13

t 2 g 0.1 j 1 c 1

0

62.58

59.09

60.84

0.22

15

t 2 g 0.1 j 1 c 10

0

59.93

57.63

58.78

0.18

17

t 2 g 0.001 j 1 c 10

0

58.37

57.18

57.78

0.16

19

t 2 g 0.001 j 1 c 10

0.1

52.92

63.78

58.35

0.17

21

t 2 g 0.001 j 1 c 10

0

59.69

57.22

58.45

0.17

  1. *(Thr- Threshold, Sen - Sensitivity, Spe - Specificity, Acc - Accuracy, MCC - Matthew's correlation coefficient)