Table 3 The performance SVM models developed using composition profile of patterns at different window lengths
From: Identification of conformational B-cell Epitopes in an antigen from its primary sequence
Window size | Kernel parameters | Thr* | Sen | Spe | Acc | MCC |
|---|---|---|---|---|---|---|
5 | t 2 g 0.001 j 1 c 1 | 0 | 61.75 | 58.11 | 59.93 | 0.2 |
7 | t 2 g 0.001 j 1 c 10 | 0 | 68.35 | 62.2 | 65.27 | 0.31 |
9 | t 2 g 0.001 j 1 c 10 | 0 | 73.45 | 67.21 | 70.33 | 0.41 |
11 | t 2 g 0.01 j 1 c 1 | -0.1 | 82.08 | 77.26 | 79.67 | 0.59 |
13 | t 2 g 0.01 j 1 c 10 | -0.1 | 82.57 | 84.17 | 83.37 | 0.67 |
15 | t 2 g 0.01 j 1 c 1 | -0.1 | 79.96 | 90.31 | 85.14 | 0.71 |
17 | t 2 g 0.01 j 1 c 1 | -0.1 | 80.69 | 90.1 | 85.4 | 0.71 |
19 | t 2 g 0.01 j 1 c 1 | -0.1 | 83.13 | 90.06 | 86.59 | 0.73 |
21 | t 2 g 0.01 j 1 c 1 | -0.1 | 83.62 | 88.96 | 86.29 | 0.73 |