Table 4 The performance of BPP and CPP based SVM model on Benchmark dataset, developed using balance and realistic set of patterns.
From: Identification of conformational B-cell Epitopes in an antigen from its primary sequence
Type of Pattern set | Model | SVM parameters | Thr* | Sen | Spe | Acc | MCC |
|---|---|---|---|---|---|---|---|
Realistic | BPP | t 2 g 0.001 j 10 c 10 | -0.2 | 50.49 | 60.28 | 59.49 | 0.06 |
| Â | CPP | t 2 g 0.001 j 10 c 10 | -0.3 | 80.41 | 84.64 | 84.30 | 0.44 |
Balance | BPP | t 2 g 0.01 j 1 c 10 | 0.1 | 61.31 | 51.22 | 56.27 | 0.13 |
| Â | CPP | t 2 g 0.01 j 1 c 10 | 0 | 82.36 | 89.42 | 85.89 | 0.72 |