Table 2 The performance of PPP based SVM model developed different window lengths from 5 to 21 residues
From: Identification of conformational B-cell Epitopes in an antigen from its primary sequence
W | Kernel parameters | Thr* | Sen | Spe | Acc | MCC |
|---|---|---|---|---|---|---|
5 | t 2 g 0.00001 j 1 c 10 | -0.3 | 53.95 | 59.62 | 56.78 | 0.14 |
7 | t 2 g 0.00001 j 1 c 10 | 0.1 | 55.82 | 58.03 | 56.93 | 0.14 |
9 | t 2 g 0.00001 j 1 c 10 | 0 | 54.56 | 55.84 | 55.2 | 0.1 |
11 | t 2 g 0.00001 j 1 c 10 | 0.1 | 52.3 | 62.48 | 57.39 | 0.15 |
13 | t 2 g 0.00001 j 1 c 10 | 0.1 | 55.11 | 60.37 | 57.74 | 0.16 |
15 | t 2 g 0.00001 j 1 c 10 | 0 | 56.57 | 60.06 | 58.31 | 0.17 |
17 | t 2 g 0.00001 j 1 c 10 | 0 | 60.19 | 55.77 | 57.98 | 0.16 |
19 | t 2 g 0.00001 j 1 c 10 | 0 | 57.82 | 54.15 | 55.98 | 0.12 |
21 | t 1 d 1 | 0 | 57.31 | 58.32 | 57.81 | 0.16 |