MHC class | Peptide PDB Allele | Peptide PDB | MHC Template Structure | Template Allele | Peptide Length | Peptide Sequence | Cα RMSD (Å) | |
---|---|---|---|---|---|---|---|---|
 |  |  |  |  |  |  | Previous method | pDOCK |
I | HLA-A*0201 | 2v2w | 1qrn | HLA-A*0201 | 9 | SLYNTVATL | 0.63 | 0.38 |
I | HLA-A*0201 | 1hhh | 1qrn | HLA-A*0201 | 10 | FLPSDFFPSV | 0.58 | 0.25 |
I | HLA-A*0201 | 1qse | 1qrn | HLA-A*0201 | 9 | LLFGYPRYV | 0.62 | 0.30 |
I | HLA-A*0201 | 2bnq | 1qrn | HLA-A*0201 | 9 | SLLMWITQV | 0.97 | 0.77 |
I | HLA-A*0201 | 2gj6 | 1qrn | HLA-A*0201 | 9 | LLFGKPVYV | 0.56 | 0.24 |
I | HLA-A*0201 | 1qr1 | 1qrn | HLA-A*0201 | 9 | IISAVVGIL | 0.87 | 0.36 |
I | HLA-A*0201 | 1qsf | 1qrn | HLA-A*0201 | 9 | LLFGYPVAV | 0.94 | 0.41 |
I | HLA-A*0201 | 1bd2 | 1qrn | HLA-A*0201 | 9 | LLFGYPVYV | 0.68 | 0.46 |
I | HLA-A*0201 | 1hhg | 1i4f | HLA-A*0201 | 9 | TLTSCNTSV | 0.58 | 0.56 |
I | HLA-A*0201 | 1hhh | 1i4f | HLA-A*0201 | 10 | FLPSDFFPSV | 1.48 | 0.57 |
I | H2-Kb | 1osz | 1nam | H2-Kb | 8 | RGYLYQGL | 0.85 | 0.47 |
I | H2-Kb | 1fo0 | 1nam | H2-Kb | 8 | INFDFNTI | 0.62 | 0.35 |
I | H2-Kb | 1g6r | 1nam | H2-Kb | 8 | SIYRYYGL | 0.66 | 0.11 |
I | H2-Kb | 1kbg | 1nam | H2-Kb | 8 | RGYVYXGL | 0.40 | 0.06 |
I | H2-Kb | 1g7p | 1nam | H2-Kb | 9 | SRDHSRTPM | 1.41 | 0.82 |
II | HLA-DRB1*0101 | 1fyt | 2iam | HLA-DRB1*0101 | 13 | PKYVKQNTLKLAT | 0.69 | 0.35 |
II | HLA-DRB1*0101 | 1klu | 2iam | HLA-DRB1*0101 | 15 | GELIGTLNAAKVPAD | 0.85 | 0.59 |
II | HLA-DRB1*0101 | 1t5w | 2iam | HLA-DRB1*0101 | 13 | AAYSDQATPLLLS | 0.99 | 0.65 |
II | HLA-DRB1*0101 | 1pyw | 2iam | HLA-DRB1*0101 | 9 | FVKQNAXAL | 0.40 | 0.32 |
II | HLA-DRB1*0101 | 1sje | 2iam | HLA-DRB1*0101 | 15 | PEVIPMFSALSEGAT | 0.70 | 0.37 |
II | HLA-DRB1*0101 | 1aqd | 2iam | HLA-DRB1*0101 | 14 | GSDWRFLRGYHQYA | 1.68 | 1.01 |