MHC class | Peptide PDB Allele | Peptide PDB | MHC Template Structure | Template Allele | Peptide Length | Peptide Sequence | Cα RMSD compared to template peptides (Å) | |
---|---|---|---|---|---|---|---|---|
 |  |  |  |  |  |  | Previous method | pDOCK |
I | HLA-B*3501 | 1zhk# | 1zhl# | HLA-B*3508 | 13 | LPEPLPQGQLTAY | 0.62 | 0.44 |
I | HLA-B*3501 | 1zsd# | 2ak4 | HLA-B*3508 | 11 | EPLPQGQLTAY | 1.15 | 0.79 |
I | H2-Kb | 2vaa# | 1ce6 | H2-Db | 9 | FAPGNYPAL | 0.73 | 0.21 |
II | HLA-DRB1*1501 | 1bx2# | 1fv1 | HLA-DRB5*0101 | 14 | ENPVVHFFKNIVTP | 1.01 | 0.22 |