Ritz U, Seliger B: The transporter associated with antigen processing (TAP): structural integrity, expression, function, and its clinical relevance. Mol. Med. 2001, 7: 149-158.
PubMed Central
CAS
PubMed
Google Scholar
Heemels MT, Ploegh HL: Substrate specificity of allelic variants of the TAP peptide transporter. Immunity. 1994, 1: 775-784. 10.1016/S1074-7613(94)80019-7.
Article
CAS
PubMed
Google Scholar
van Endert PM, Tampé R, Meyer TH, Tisch R, Bach JF, McDevitt HO: A sequential model for peptide binding and transport by the transporters associated with antigen processing. Immunity. 1994, 1: 491-10.1016/1074-7613(94)90091-4.
Article
CAS
PubMed
Google Scholar
Lefranc MP, Lefranc G: The T cell receptor facts book. 2001, Academic Press. London
Google Scholar
Lankat-Buttgereit B, Tampé R: The transporter associated with antigen processing: function and implications in human diseases. Physiol. Rev. 2002, 82: 187-204.
Article
CAS
PubMed
Google Scholar
van Endert PM, Riganelli D, Greco G, Fleischhauer K, Sidney J, Sette A, Bach JF: The peptide-binding motif for the human transporter associated with antigen processing. J. Exp. Med. 1995, 182: 1883-1895. 10.1084/jem.182.6.1883.
Article
CAS
PubMed
Google Scholar
Uebel S, Kraas W, Kienle S, Wiesmüller KH, Jung G, Tampé R: Recognition principle of the TAP translocator disclosed by combinatorial peptide libraries. Proc. Natl. Acad. Sci. 1997, 94: 8976-8981. 10.1073/pnas.94.17.8976.
Article
PubMed Central
CAS
PubMed
Google Scholar
Larsen MV, Nielsen M, Weinzier A, Lund O: TAP-independent MHC class I presentation. Curr. Immunol. Rev. 2006, 2: 233-245. 10.2174/157339506778018550.
Article
CAS
Google Scholar
Daniel S, Brusic V, Caillat-Zucman S, Petrovsky N, Harrison L, Riganelli D, Sinigaglia F, Gallazzi F, Hammer J, van Endert P: Relationship between peptide selectivities of human transporters associated with antigen processing and HLA class I molecules. J. Immunol. 1998, 161: 617-624.
CAS
PubMed
Google Scholar
Zhang GL, Petrovsky N, Kwoh CK, August JT, Brusic V: PredTAP: a system for prediction of peptide binding to the human transporter associated with antigen processing. Immunome Res. 2006, 2: 3-10.1186/1745-7580-2-3.
Article
PubMed Central
PubMed
Google Scholar
Doytchinova I, Hemsley S, Flower DR: Transporter associated with antigen processing preselection of peptides binding to the MHC: a bioinformatics evaluation. J. Immunol. 2004, 173: 6813-6819.
Article
CAS
PubMed
Google Scholar
Bhasin M, Raghava GP: Analysis and prediction of affinity of TAP binding peptides using cascade SVM. Protein Sci. 2004, 13: 596-607. 10.1110/ps.03373104.
Article
PubMed Central
CAS
PubMed
Google Scholar
Peters B, Bulik S, Tampe R, van Endert PM, Holzhütter HG: Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors. J Immunol. 2003, 171: 1741-1749.
Article
CAS
PubMed
Google Scholar
Diez-Rivero CM, Chenlo B, Zuluaga P, Reche PA: Quantitative modeling of peptide binding to TAP using support vector machine. Protein. 2009, 10: 1002-1012.
Google Scholar
Lata S, Bhasin M, Raghava GP: MHCBN 4.0: A database of MHC/TAP binding peptides and T-cell epitopes. BMC Research Notes. 2009, 2: 61-67. 10.1186/1756-0500-2-61.
Article
PubMed Central
PubMed
Google Scholar
Weinzierl AO, Rudolf D, Hillen N, Tenzer S, van Endert PM, Schild H, Rammensee HG, Stevanović S: Features of TAP-independent MHC class I ligands revealed by quantitative mass spectrometry. Eur. J. Immunol. 2008, 38: 1503-1510. 10.1002/eji.200838136.
Article
CAS
PubMed
Google Scholar
Joachims T: Making large-Scale SVM learning practical. Advances in Kernel Methods - Support Vector. Edited by: Scholkopf,B. 1999, MIT-Press, Cambridge MA, 42-56.
Google Scholar
Muh HC, Tong JC, Tammi MT: AllerHunter: a SVM-pairwise system for assessment of allergenicity and allergic cross-reactivity in proteins. PLoS ONE. 2009, 4: e5861-10.1371/journal.pone.0005861.
Article
PubMed Central
PubMed
Google Scholar
Doytchinova IA, Guan P, Flower DR: EpiJen: a server for multi-step T cell epitope prediction. BMC Bioinformatics. 2006, 7: 131-142. 10.1186/1471-2105-7-131.
Article
PubMed Central
PubMed
Google Scholar
Guan P, Doytchinova IA, Zygouri C, Flower DR: MHCPred: bringing a quantitative dimension to the online prediction of MHC binding. Appl Bioinformatics. 2003, 2: 63-66.
CAS
PubMed
Google Scholar
Larsen MV, Lundegaard C, Lamberth K, Buus S, Lund O, Nielsen M: Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction. BMC Bioinformatics. 2007, 8: 424-10.1186/1471-2105-8-424.
Article
PubMed Central
PubMed
Google Scholar
Dönnes P, Kohlbacher O: Integrated modeling of the major events in the MHC class I antigen processing pathway. Protein Sci. 2005, 14: 2132-2140. 10.1110/ps.051352405.
Article
PubMed Central
PubMed
Google Scholar